viper - Virtual Inference of Protein-activity by Enriched Regulon analysis
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Last updated 5 months ago
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
6.94 score 80 dependencies 5 dependentsgenomicInstability - Genomic Instability estimation for scRNA-Seq
This package contain functions to run genomic instability analysis (GIA) from scRNA-Seq data. GIA estimates the association between gene expression and genomic location of the coding genes. It uses the aREA algorithm to quantify the enrichment of sets of contiguous genes (loci-blocks) on the gene expression profiles and estimates the Genomic Instability Score (GIS) for each analyzed cell.
Last updated 5 months ago
systemsbiologygeneexpressionsinglecell
5 stars 4.00 score 94 dependenciesdiggit - Inference of Genetic Variants Driving Cellular Phenotypes
Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm
Last updated 5 months ago
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
3.30 score 87 dependencies