viper - Virtual Inference of Protein-activity by Enriched Regulon analysis
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Last updated 24 days ago
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
6.95 score 5 packages 324 scripts 1.0k downloadsgenomicInstability - Genomic Instability estimation for scRNA-Seq
This package contain functions to run genomic instability analysis (GIA) from scRNA-Seq data. GIA estimates the association between gene expression and genomic location of the coding genes. It uses the aREA algorithm to quantify the enrichment of sets of contiguous genes (loci-blocks) on the gene expression profiles and estimates the Genomic Instability Score (GIS) for each analyzed cell.
Last updated 24 days ago
systemsbiologygeneexpressionsinglecell
4.00 score 5 stars 3 scripts 164 downloadsdiggit - Inference of Genetic Variants Driving Cellular Phenotypes
Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm
Last updated 24 days ago
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
3.30 score 3 scripts 196 downloads